Googling the phrase you found in the Stargate manual, it shows up in a number of Gottlieb manuals.
Not exhaustive, but I did try to see what gets displayed on boot-up especially when we do have alternate sets that can be compared.
Sys1 - only alternate set for Sinbad - I don't see any rev numbers on boot-up
Sys80 - I don't see any rev numbers on boot-up
Sys80a - we only have alternate sets for Caveman. Both crash the Setup -> Test feature.
Sys80b - only have alternate sets for Arena, Monte Carlo, Raven, Spring Break, and Tag-Team Pinball - I don't see any rev numbers on boot-up
Sys3 - Cue Ball Wizard, Lights, Camera, Action, Street Fighter II, Super Mario Bros., - No rev numbers but there are on-display gprom checksum test results that can be used to distinguish one set from another. Just would not be able to tell which one is updated code.
Freddy: A Nightmare on Elm Street, Mario Andretti, Shaq Attaq, Stargate, Strikes N' Spares, Tee'd Off, Waterworld, Wipe Out, World Challenge Soccer - indicates a rev using a suffix to the production number code on boot-up (Ex. GAME #744/3 for rev 3 of Freddy and GAME #744/4 for rev 4 of Freddy). The current PinMAME set name is not always indicative of the rev number. We currently have freddy for rev 3 and freddy4 for rev 4. We don't have an initial version for Freddy. There is an initial version and rev 1 for Stargate. There is no suffix after the production number code for the initial version. (Ex. GAME #742 for the initial version of Stargate and GAME #742/1 for rev 1 of Stargate).
We have a set called Tee'd Off (rev. 3) - teedoff3 that boots to Game #736/1 rather than #736/3. It does have a different gprom checksum than rev 1.
Set name for Waterworld (rev. 2) is waterwl2. Set name for Waterworld (rev. 3) is currently waterwld. We don't have an initial version of Waterworld.
Set name for Wipe Out (rev. 2) is currently wipeout. We don't have an initial version of Wipe Out.
Set name for World Challenge Soccer (rev. 1) is currently wcsoccer. We don't have an initial version of World Challenge Soccer.
World Challenge Soccer (rev. 1) has Game #741/1 and gprom checksum 81E4
World Challenge Soccer (display rev. 2) wcsoccd2 also has Game #741/1 and gprom checksum 81E4
Hope this helps.